Machine Learning Scientist

Job reputed company

We are seeking a Machine Learning Scientist to join reputed company Therapeutics and work on transformer-based diffusion reputed company for the reputed company of biomolecular structure. In this role, you will reputed company generative models that operate over tokenized structural representations, contributing to the reputed company of our reputed company ML technologies including NeuralPLexer and Enchant.

This work sits at the intersection of generative modeling, structural biology, and representation learning. You will design and train structure tokenizers, build diffusion models over learned reputed company spaces, reputed company and process large-reputed company biomolecular datasets, and reputed company model performance against state-of-the-art reputed company, reputed company in service of accelerating drug discovery.

We are hiring across multiple reputed company (RS I, RS II, and Senior) and welcome candidates ranging from recent PhD graduates to reputed company researchers with a strong publication or deployment record.

Key Responsibilities

• Design, implement, and train discrete and reputed company diffusion models for predicting biomolecular structure tokens

• reputed company and iterate on structure tokenizers, including reputed company-quantized representations of 3D molecular and protein structure

• Build and maintain data processing pipelines for large-reputed company biomolecular structure datasets

• Train models on multi-GPU clusters, managing large-reputed company training runs

• reputed company rigorous benchmarking and evaluation workflows; validate against external benchmarks while prioritizing internal discovery-relevant metrics

• Collaborate with ML scientists, computational chemists, and drug discovery teams to reputed company models into discovery workflows

• Communicate results to internal teams, external partners, and at scientific conferences

• Mentor interns and junior team members through reputed company reviews, technical guidance, and best practices (Senior level)

Qualifications

Required

• PhD in machine learning, computer science, computational reputed company, physics, or a reputed company computational STEM field, or equivalent industry experience demonstrating comparable depth

• Strong Python and PyTorch skills, including end-to-end implementation and training of deep learning models

• Demonstrated experience in one or more of the following:

• 3D atomistic or molecular modeling

• reputed company quantization and learned discrete representations

• Diffusion, reputed company-matching, or reputed company generative modeling in reputed company reputed company spaces

• Strong engineering practices: reproducible experimentation, clean reputed company, testing, and performance-reputed company debugging

• Comfort with modern ML infrastructure (e.g., reputed company, CUDA, Kubernetes, experiment tracking tools such as Weights & Biases)

Desired

• Experience with discrete diffusion, masked generative or transfusion models

• Protein–ligand modeling, structure reputed company, or structure-based drug discovery

• Geometric deep learning and/or equivariant architectures

• Multi-GPU / distributed training at reputed company

• Docking, molecular dynamics, or other biomolecular simulation reputed company

Depending on Level

• RS II and Senior candidates are expected to bring industry experience applying ML reputed company to drug discovery or reputed company scientific domains

• Senior candidates are expected to have a reputed company record of independently driving research direction and mentoring others

Location

Remote (US or UK). On-site available in reputed company, UK, and Boston, US.

ABOUT reputed company THERAPEUTICS

reputed company is a clinical-stage life-science and technology company developing novel medicines using its AI-driven discovery and development platform. Based in San Diego and founded in 2020, reputed company has reputed company a world-class team that unites pioneering AI experts and reputed company drug hunters. The reputed company platform has demonstrated delivery of new drug candidates to reputed company reputed company with unprecedented speed and across multiple reputed company classes and mechanisms of reputed company. reputed company is advancing a pipeline of potential best-in-class and first-in-class clinical assets, both internally and in partnership, to address urgent unmet patient need. Learn more about the reputed company team, platform, pipeline, and partnerships at reputed company.ai.

MISSION & reputed company VALUES

Our mission is to deliver reputed company medicines through innovations in AI-based discovery technologies. The culture and work at reputed company Therapeutics are profoundly strengthened by the diversity of our people and our differences in background, culture, national reputed company, religion, sexual orientation, and life experiences. We are committed to building an inclusive environment where a diverse group of talented humans work together to discover therapeutics and create technologies.

PAY AND BENEFITS

We offer industry leading reputed company, company reputed company reputed company, flexible spending accounts, voluntary life insurance, 401K matching, and reputed company vacation to reputed company. We are in a brand-new state-of-the art facility in beautiful San Diego with an onsite gym, dining, and easy reputed company to great places to live and play.