Programmer Analyst I – Genomic Health Institute in Manhattan, NY – Minerva, NY

Programmer Analyst I - Genomic Health Institute - Mount Sinai Medical Center - Manhattan, NY - Minerva, NY - work from home job Company: Mount Sinai Medical Center Job description: Job Description: Description Strength Through Diversity Ground breaking science. Advancing medicine. Healing made personal. Roles & Responsibilities: We are inviting applications for a Programmer Analyst I position in applied machine learning with a specific interest in applications to genomics and electronic health records (EHR). The Pejaver Lab is an interdisciplinary group with diverse but interlinked research interests related to biomedical data science and machine learning methodology development. The position will be situated at the Institute for Genomic Health (IGH) at the Icahn School of Medicine at Mount Sinai in Manhattan, New York, NY, USA but hybrid/remote work options can be considered. IGH aims to close the gap between genomic research and healthcare through discoveries and algorithms focused on diverse populations. Data resources include (a) Access to >8 million patient records in the Mount Sinai Data Warehouse and (b) The BioMe Biobank Program with >30,000 patients with whole exome sequencing data linked to longitudinal clinical data. Mount Sinai also houses Minerva, a world-class high-performance computing resource, with specifications that include over 2 petaflops of compute cores and nearly 90 GPU cores, among others. The applications that the Pejaver Lab is interested in developing methods for require innovative problem formulations, novel learning algorithms and/or customized objective functions. We also particularly emphasize end-to-end implementation of our methods, with the aim of increased adoption and improved decision support in genomic research and healthcare settings. Topics of interest include few-shot learning, similarity learning, interpretable machine learning, and model calibration Responsibilities • Modifying and/or implementing code for published machine learning algorithms and data science techniques • Scaling up laboratory software and pipelines to make them more efficient on large genomic data sets • Benchmarking pipelines to process and model biomedical data sets • Refactoring code developed by the laboratory into shareable software and web-based applications • Supporting trainees with programming and software engineering tasks Qualifications • Bachelors degree in Computer Science or a related discipline. MS in Computer Science, Informatics, Data Science, or a related discipline is preferred. • Expertise in programming in Python, R and/or MATLAB • Proficiency in optimizing code within a high-performance computing environment • Experience in machine learning methodology development and implementation of machine learning algorithms and pipelines, including data preparation techniques • Demonstrable interest in implementing and evaluating computational pipelines for biomedical data sets, particularly populations-scale biobank data Desired qualifications include: • Experience with deep learning frameworks such as TensorFlow and PyTorch • Proficiency in general GPU programming and related frameworks Employer Description Strength Through Diversity The Mount Sinai Health System believes that diversity, equity, and inclusion are key drivers for excellence. We share a common devotion to delivering exceptional patient care. When you join us, you become a part of Mount Sinai's unrivaled record of achievement, education, and advancement as we revolutionize medicine together. We invite you to participate actively as a part of the Mount Sinai Health System team by: • Using a lens of equity in all aspects of patient care delivery, education, and research to promote policies and practices to allow opportunities for all to thrive and reach their potential. • Serving as a role model confronting racist, sexist, or other inappropriate actions by speaking up, challenging exclusionary organizational practices, and standing side-by-side in support of colleagues who experience discrimination. • Inspiring and fostering an environment of anti-racist behaviors among and between departments and co-workers. We work hard to acquire and retain the best people and to create an inclusive, welcoming and nurturing work environment where all feel they are valued, belong and are able to professional advance. We share the belief that all employees, regardless of job title or expertise contribute to the patient experience and quality of patient care. Explore more about this opportunity and how you can help us write a new chapter in our history! “About the Mount Sinai Health System: Mount Sinai Health System is one of the largest academic medical systems in the New York metro area, with more than 43,000 employees working across eight hospitals, more than 400 outpatient practices, more than 300 labs, a school of nursing, and a leading school of medicine and graduate education. Mount Sinai advances health for all people, everywhere, by taking on the most complex health care challenges of our time - discovering and applying new scientific learning and knowledge; developing safer, more effective treatments; educating the next generation of medical leaders and innovators; and supporting local communities by delivering high-quality care to all who need it. Through the integration of its hospitals, labs, and schools, Mount Sinai offers comprehensive health care solutions from birth through geriatrics, leveraging innovative approaches such as artificial intelligence and informatics while keeping patients' medical and emotional needs at the center of all treatment. The Health System includes approximately 7,400 primary and specialty care physicians; 13 joint-venture outpatient surgery centers throughout the five boroughs of New York City, Westchester, Long Island, and Florida; and more than 30 affiliated community health centers. We are consistently ranked by U.S. News & World Report's Best Hospitals, receiving high "Honor Roll" status, and are highly ranked: No. 1 in Geriatrics and top 20 in Cardiology/Heart Surgery, Diabetes/Endocrinology, Gastroenterology/GI Surgery, Neurology/Neurosurgery, Orthopedics, Pulmonology/Lung Surgery, Rehabilitation, and Urology. New York Eye and Ear Infirmary of Mount Sinai is ranked No. 12 in Ophthalmology. U.S. News & World Report's “Best Children's Hospitals” ranks Mount Sinai Kravis Children's Hospital among the country's best in several pediatric specialties. The Icahn School of Medicine at Mount Sinai is ranked No. 14 nationwide in National Institutes of Health funding and in the 99th percentile in research dollars per investigator according to the Association of American Medical Colleges. Newsweek's “The World's Best Smart Hospitals” ranks The Mount Sinai Hospital as No. 1 in New York and in the top five globally, and Mount Sinai Morningside in the top 20 globally. The Mount Sinai Health System is an equal opportunity employer. We comply with applicable Federal civil rights laws and does not discriminate, exclude, or treat people differently on the basis of race, color, national origin, age, religion, disability, sex, sexual orientation, gender identity, or gender expression. We are passionately committed to addressing racism and its effects on our faculty, staff, students, trainees, patients, visitors, and the communities we serve. Our goal is for Mount Sinai to become an anti-racist health care and learning institution that intentionally addresses structural racism.” EOE Minorities/Women/Disabled/Veterans Compensation The Mount Sinai Health System (MSHS) provides a salary range to comply with the New York City Law on Salary Transparency in Job Advertisements. The salary range for the role is $67500 - $101640 Annually. Actual salaries depend on a variety of factors, including experience, education, and hospital need. The salary range or contractual rate listed does not include bonuses/incentive, differential pay or other forms of compensation or benefits. Programmer Analyst I - Genomic Health Institute - Mount Sinai Medical Center - Manhattan, NY - Minerva, NY - work from home job Expected salary: $67500 - 101640 per year Location: Manhattan, NY - Minerva, NY Programmer Analyst I - Genomic Health Institute - Mount Sinai Medical Center - Manhattan, NY - Minerva, NY - work from home job Job date: Wed, 09 Aug 2023 23:34:30 GMT Apply for the job now! Programmer Analyst I - Genomic Health Institute - Mount Sinai Medical Center - Manhattan, NY - Minerva, NY - work from home job Apply tot his job Apply To this Job