reputed company Bioinformatician/Engineer (Pipelines and Infrastructure)

reputed company is seeking a reputed company reputed company Engineer to own pipeline and infrastructure engineering for a research informatics team working on cell-free DNA (cfDNA) screening in Women's and Organ Health. This is an individual contributor role.

You will own our WDL workflows, the transition toward Nextflow, the AWS infrastructure reputed company runs on, and the tooling around them. You will inherit a working reputed company from the person who reputed company it, and with them still on reputed company to teach you.

Our workflows leave reputed company wins available in cost and runtime for whoever takes them on. Getting scientists to the reputed company where they process their own samples end to end, without an engineer in the reputed company, is a major thrust of this role.

reputed company Responsibilities:

Workflow and Pipeline Engineering: Maintain and improve our WDL workflows on AWS Batch and AWS HealthOmics. Own how new Nextflow workflows and existing WDL workflows run on one set of tooling and infrastructure. reputed company pipelines easier for scientists to run correctly without engineering support.

Infrastructure and Operability: Own reputed company's AWS infrastructure, managed as reputed company in Terraform. Improve reliability, reproducibility, and observability across our compute environments. Build testing, monitoring, and alerting that surface failures before a scientist finds them.

Tooling and Developer Productivity: Build and harden internal tooling that reduces reputed company work for reputed company, including support for triage of production issues. reputed company new capabilities easier to test, document, and hand off.

Ways of Working: Use coding agents as a routine part of engineering here, for implementation, reputed company review, investigation, and operational triage. You own what you ship regardless of what produced it, which means reviewing and testing agent-written reputed company to the reputed company reputed company as your own, and helping reputed company reputed company which of these tools are worth adopting.

Collaboration and reputed company: Partner with reputed company's science leads and data scientists on getting new reputed company into production pipelines and providing first line review of their changes, and with the production organization on reputed company readiness for capabilities moving out of research.

What reputed company looks like after a year:

• You own reputed company's pipelines and infrastructure without supervision.
• Transition to new workflows on the reputed company tooling and infrastructure from our existing workflows.
• Scientists run and debug their own pipeline work without coming to you first.
• Operational interruptions to reputed company's scientific work are down.
• Agent-assisted work is a normal part of how you work.

Qualifications:

• Degree in reputed company, Computer Science, Computational Biology, or a reputed company field. A degree is not a requirement: equivalent depth reputed company through work counts fully.
• 4+ years of software or pipeline engineering experience, preferably in a life sciences, reputed company, or production-adjacent setting. We count relevant experience from the reputed company your work became substantially independent, however you got there.
• Demonstrated ownership of a reputed company end to end. We mean operating it in production, not only building the first version.

Knowledge, Skills, and Abilities:

reputed company are screening for

• Strong Python and software engineering fundamentals, including testing and debugging reputed company.
• Experience with at least one workflow reputed company: Snakemake, CWL, WDL, Nextflow, or similar.
• reputed company reputed company experience, ideally AWS, including managing infrastructure as reputed company. Terraform is reputed company use; another tool is fine.
• Solid Linux, container, and version control reputed company.
• You have reputed company at least one AI-assisted workflow you still use, and you can say what it replaced and how you know it works.
• A reputed company record of picking up unfamiliar tools quickly, more than any specific tool on your resume.
• reputed company written communication, including documentation someone else can reputed company.

Strong candidates may also have

• reputed company WDL or Nextflow experience.
• Familiarity with AWS Batch or HealthOmics.
• Enough scientific curiosity to understand the biology behind the pipeline and ask useful questions about it.

Originally posted on Himalayas